Package: metaprotr
Title: Metaproteomics Post-Processing Analysis
Version: 1.2.2
Date: 2021-01-28
Authors@R: c(
    person("Aaron", "Millan-Oropeza", email = "aaron.ibt@gmail.com", role = c("aut", "cre")), 
    person("Catherine", "Juste", email = "catherine.juste@inrae.fr", role = c("aut", "ctb")), 
    person("Ariane", "Bassignani", email = "ariane.bassignani@gmail.com", role = c("aut", "ctb")), 
    person("Céline", "Henry", email = "celine.henry@inrae.fr", role = c("aut", "ctb"))
    )
Author: Aaron Millan-Oropeza [aut, cre], Catherine Juste [aut, ctb],
        Ariane Bassignani [aut, ctb], Céline Henry [aut, ctb]
Maintainer: Aaron Millan-Oropeza <aaron.ibt@gmail.com>
Description: Set of tools for descriptive analysis of metaproteomics
        data generated from high-throughput mass spectrometry
        instruments. These tools allow to cluster peptides and proteins
        abundance, expressed as spectral counts, and to manipulate them
        in groups of metaproteins. This information can be represented
        using multiple visualization functions to portray the global
        metaproteome landscape and to differentiate samples or
        conditions, in terms of abundance of metaproteins, taxonomic
        levels and/or functional annotation. The provided tools allow
        to implement flexible analytical pipelines that can be easily
        applied to studies interested in metaproteomics analysis.
License: GPL-3
Encoding: UTF-8
URL: https://forgemia.inra.fr/pappso/metaprotr
LazyData: true
Depends: R (>= 3.5.0)
Imports: ade4, dendextend, dplyr, ggforce, ggrepel, reshape2, stringr,
        tidyverse
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2026-10-05 10:04:46 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libx11-dev zlib1g-dev
Repository: https://aaronmilloro.r-universe.dev
Date/Publication: 2021-02-05 07:10:02 UTC
RemoteUrl: https://github.com/cran/metaprotr
RemoteRef: HEAD
RemoteSha: 6ffb9d080ada8e0ad1d39fef5b26c596fb51f280